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- Smith and Nezbeda associated fluid model
- Smoluchowski equation
- Smooth Particle methods
- Snub hexagonal model
- Sodium
- Sodium bromide
- Sodium chloride
- Sodium chloride-water mixture
- Sodium hydroxide-water mixture
- Soft-SAFT
- Soft-core Gay-Berne model
- Soft-core Lennard-Jones model
- Soft-core mean spherical approximation
- Soft-core square well model
- Soft cluster crystal phase
- Soft sphere attractive Yukawa model
- Soft sphere potential
- Soft–core Gay–Berne model
- Solana hard disk equation of state
- Solid-liquid phase transitions
- Solutions
- Song and Mason EOS for hard convex bodies
- Song and Mason equation of state for hard convex bodies
- Song and Mason perturbation theory
- Source code for the minimum distance between two rods
- Speed of sound
- Spherical harmonics
- Spherical pores
- Spinodal decomposition
- Square shoulder + square well
- Square shoulder + square well model
- Square shoulder model
- Square well chains
- Square well lines potential
- Square well model
- Square well potential: virial coefficients
- Square well spherocylinders
- Stanislaw Ulam
- Star polymers
- Statistical-temperature simulation algorithm
- Statistical geometry
- Statistical mechanics
- Sticky hard sphere model
- Stiffened equation of state
- Stillinger-Weber potential
- Stirling's approximation
- Stockmayer potential
- Stokes-Einstein relation
- Stoyanov-Groot thermostat
- Stress
- Strongly correlating liquids
- Structure factor
- Subject classification schemes
- Substantive derivative
- Sulfur
- Sulfur hexafluoride
- Sulfur hexafluoride.pdb
- Supercooling
- Supercooling and nucleation
- Superglass phase
- Superheating
- Superionic water
- Surface melting
- Surface tension
- Surface tension of water
- Sutherland potential
- Sutton-Chen
- Synthetic method
- T. E. Wainwright
- TCPE
- TCPE model of water
- TE-13 model
- TINKER
- TIP3P
- TIP3P/Fs model of water
- TIP3P model of water
- TIP4F
- TIP4F model of water
- TIP4P
- TIP4P-Ew
- TIP4P-Ew model of water
- TIP4P-HB
- TIP4P-HB model of water
- TIP4P-I
- TIP4P-QDP
- TIP4P-QDP model of water
- TIP4P-pol
- TIP4P-pol model of water
- TIP4P/2005
- TIP4P/2005 model of water
- TIP4P/2005f water model
- TIP4P/Ew
- TIP4P/FQ
- TIP4P/FQ model of water
- TIP4P/Ice
- TIP4P/Ice model of water
- TIP4P/epsilon
- TIP4P/ice
- TIP4P/ε water model
- TIP4P2005f-N500.gro
- TIP4P2005f-N500.mdp
- TIP4P2005f-N500.top
- TIP4PQ/2005
- TIP4PQ/2005 model of water
- TIP4PQ D2O model of water
- TIP4PQ T2O model of water
- TIP4P model of water
- TIP4Q model of water
- TIP5P
- TIP5P-E
- TIP5P-E model of water
- TIP5P model of water
- TIPS
- TIPS2
- TIPS2 model of water
- TIPS model of water
- TPT-CF
- TTM2-F
- TTM2-F model of water
- TTM2-R
- TTM2-R model of water
- TTM2.1-F
- TTM2.1-F model of water
- TTM3-F
- TTM3-F model of water
- Tables
- Tait equation of state
- Tangent linear hard sphere chains
- Tapias-Sanders-Bravetti geometric integrator
- Tarazona's weighted density approximation
- Tejero and Cuesta hard disk equation of state
- Tellurium
- Temperature
- Tempering methods
- Terbium
- Tersoff potential
- Tesla Bio Workbench
- Test area method
- Test volume method
- Tethered Monte Carlo
- Tetrachloromethane
- Tetrachloromethane.pdb
- Tetrafluoromethane
- Tetrafluoromethane.pdb
- Tetrahedral hard sphere model
- Thallium
- Thermal conductivity
- Thermal energy
- Thermal expansion coefficient
- Thermal potential
- ThermoML
- Thermodynamic consistency
- Thermodynamic integration
- Thermodynamic limit
- Thermodynamic potential
- Thermodynamic relations
- Thermostats
- Theta solvent
- Thiele hard sphere equation of state
- Third law of thermodynamics
- Thomas Andrews
- Tietz potential
- Time step
- Tin
- Tip3p
- Titanium
- Titanium dioxide
- Topological phase transitions
- Total correlation function
- ToyMD
- TraPPE
- TraPPE force field
- Transport properties
- Triangular lattice model
- Triangular lattice ramp model
- Triangular well model
- Trifluoroethanol-water mixture
- Trimethylamine N-oxide - water mixture
- Trimethylphosphine
- Triphenyl phosphite
- Triple point
- Trotter formula
- Truncated octahedral periodic boundary conditions
- Twisted grain-boundary phase
- Two-center Lennard-Jones model: virial coefficients
- Two-phase thermodynamic (2PT) model
- Two center Lennard-Jones model
- Two center Lennard-Jones plus point dipole model
- Two center Lennard-Jones plus point quadrupole model
- Twu-Sim-Tassone equation of state
- UFF
- UFF force field
- UHBD
- UNRES
- UNRES force field
- Ubiquitin
- Uhlenbeck-Ford model
- Ultrasoft restricted primitive model
- Umbrella sampling
- Unitary matrices
- United-atom model
- Universal gas constant
- Universality classes
- Uranyl chloride-water mixture
- Urea
- Urea.pdb
- VASP
- VLABON force field
- VMD
- VR-SAFT
- VRT(ASP-W)III
- VRT(ASP-W)III model of water
- Van Laar point
- Van der Waals' density gradient theory
- Van der Waals equation of state
- Vapour pressure
- Variables
- Vega EOS for hard ellipsoids
- Vega equation of state for hard ellipsoids
- Velocity Verlet algorithm
- Verlet leap-frog algorithm
- Verlet modified
- Verlet neighbour list
- Villin headpiece
- Virial
- Virial (disambiguation)
- Virial coefficients of model systems
- Virial equation of state
- Virial pressure
- Virial theorem
- Viscosity
- Viscosity of water
- Vogel-Fulcher-Tammann-Hesse equation
- Vogel-Fulcher-Tammann equation
- Voronoi cells
- Voronoi particles
- WBFF
- WBFF force field
- WC1 and WC2 hard sphere equations of state
- WIEN2K
- WIGGLE
- WK
- WK model of water
- Walter Kauzmann
- Wandering Interface Method
- Wandering interface method
- Wang-Landau method
- Waste recycling Monte Carlo
- Water
- Water-NaBF4
- Water-NaPF6
- Water-TP6EO2M
- Water-acetic acid mixture
- Water-acetonitrile mixture
- Water-butanol mixture
- Water-carbon dioxide mixture
- Water-dimethyl sulfoxide (DMSO)
- Water-ethanol mixture
- Water-glycerol mixture
- Water-methane mixture
- Water-methanol mixture
- Water.pdb
- Water clusters
- Water clusters: TIP3P model
- Water clusters: TIP4P/2005 model
- Water clusters: TIP4PQ/2005 model
- Water clusters: TIP4P model
- Water clusters: TIP5P model
- Water clusters: q-TIP4P/F model
- Water equation of state
- Water equation of state: experimental data
- Water models
- Weeks-Chandler-Andersen chains
- Weeks-Chandler-Andersen perturbation theory
- Weeks-Chandler-Andersen reference system model
- Weeks-Chandler-Anderson perturbation theory
- Wei potential
- Weighted density approximation
- Weighted histogram analysis method
- Wertheim's first order thermodynamic perturbation theory (TPT1)
- Wertheim's second order thermodynamic perturbation theory (TPT2)
- Wetting and dewetting
- Widom-Rowlinson model
- Widom line
- Widom test-particle method
- Wigner's distribution function
- Wigner D-matrix
- Wiki
- WikiNode
- Wikis and Science 2.0
- William John Macquorn Rankine
- William Thomson
- William W. Wood
- Williams-Landel-Ferry equation
- Wohl equation of state
- Wolf Foundation Prize
- Wolf method
- Work
- X-PLOR
- XCrysDen
- XY model
- Xenon
- YASARA
- Yakov G. Sinai
- Yang-Yang anomaly
- Yoshida and Kamakura model
- Yttria–alumina
- Yukawa closure
- Z1 and Z2 potentials
- Zeno line
- Zeolites
- Zerah-Hansen closure
- Zeroth law of thermodynamics
- Zeta potential
- Zhou's third-order thermodynamic perturbation theory
- Zhou and Solana bridge function
- Zhou thermodynamic perturbation theory
- Zwanzig's first order perturbation theory
- Zwanzig model