Reverse Monte Carlo: Difference between revisions

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#Select and move one atom at random and calculate the new distribution function, structure factor and:
#Select and move one atom at random and calculate the new distribution function, structure factor and:
<math>\chi_n^2=\sum_i(S_n^C(Q_i)-S^E(Q_i))^2/\sigma(Q_i)^2</math>
<math>\chi_n^2=\sum_i(S_n^C(Q_i)-S^E(Q_i))^2/\sigma(Q_i)^2</math>
#If <math>\chi_n^2<\chi_o^2</math> accept the move and let the new configuration become the old. If <math>\chi_n^2>\chi_o^2</math> then the move is accepted with probability <math>exp(-(\chi_n^2-\chi_0^2)/2)</math> otherwiase rejected.
#repeat from step 5
When <math>\chi^2</math> have reached an equilibrium the configuration is saved and can be analysed.


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Revision as of 19:31, 19 February 2007

Reverse Monte Carlo (RMC) [1] is a variation of the standard Metropolis Monte Carlo (MMC) method. It is used to produce a 3 dimensional atomic model that fits a set of measurements (Neutron-, X-ray-diffraction, EXAFS etc.). In addition to measured data a number of constraints based on prior knowledge of the system (like chemocal bonds etc.) can be applied. Some examples are:

  1. Closest approach between atoms (hard sphere potential)
  2. Coordination numbers.
  3. Angels in triplets of atoms.

The algorithm for RMC can be written:

  1. Start with a configuration of atoms with periodic boundary conditions. This can be a random or a crystalline configuration from a different simulation or model.
  2. Calculate the total radial distribution function for this old configuration.
  3. Transform to the total structure factor:

where Q is the momentum transfer and the number density.

  1. Calculate the difference between the measured structure factor and the one calculated from the configuration :

this sum is taken over all experimental points is the experimental error.

  1. Select and move one atom at random and calculate the new distribution function, structure factor and:

  1. If accept the move and let the new configuration become the old. If then the move is accepted with probability otherwiase rejected.
  2. repeat from step 5

When have reached an equilibrium the configuration is saved and can be analysed.


References

  1. R.L.McGreevy and L. Pusztai, Mol. Simulation, 1 359-367 (1988)