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| [http://md.chem.rug.nl/~marrink/coarsegrain.html MARTINI] ('''MAR'''rink '''T'''oolkit '''INI'''tiative) is a [[Coarse graining |coarse grained]] forcefield suited for [[molecular dynamics]] simulations of [[Biological systems |biomolecular systems]]. The forcefield has been parametrized in a systematic way, based on the reproduction of partitioning free energies between polar and apolar phases of a large number of chemical compounds. | | [http://md.chem.rug.nl/~marrink/coarsegrain.html MARTINI] ('''MAR'''rink '''T'''oolkit '''INI'''tiative) is a coarse grained forcefield suited for [[molecular dynamics]] simulations of [[Biological systems |biomolecular systems]]. The forcefield has been parametrized in a systematic way, based on the reproduction of partitioning free energies between polar and apolar phases of a large number of chemical compounds. |
| ==Functional form==
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| ==Parameters==
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| ==References== | | ==References== |
| #[http://dx.doi.org/10.1021/jp036508g Siewert J. Marrink, Alex H. de Vries, and Alan E. Mark "Coarse Grained Model for Semiquantitative Lipid Simulations", Journal of Physical Chemistry B '''108''' pp.750-760 (2004)]
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| #[http://dx.doi.org/10.1021/jp071097f Siewert J. Marrink, H. Jelger Risselada, Serge Yefimov, D. Peter Tieleman, and Alex H. de Vries "The MARTINI Force Field: Coarse Grained Model for Biomolecular Simulations", Journal of Physical Chemistry B '''111''' pp. 7812-7824 (2007)]
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| #[http://dx.doi.org/10.1021/ct700324x Luca Monticelli, Senthil K. Kandasamy, Xavier Periole, Ronald G. Larson, D. Peter Tieleman and Siewert-Jan Marrink "The MARTINI Coarse-Grained Force Field: Extension to Proteins", Journal of Chemical Theory and Computation '''4''' pp. 819–834 (2008)]
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| [[category: Force fields]] | | [[category: Force fields]] |