Editing Detailed balance

Jump to navigation Jump to search
Warning: You are not logged in. Your IP address will be publicly visible if you make any edits. If you log in or create an account, your edits will be attributed to your username, along with other benefits.

The edit can be undone. Please check the comparison below to verify that this is what you want to do, and then publish the changes below to finish undoing the edit.

Latest revision Your text
Line 3: Line 3:
<blockquote>''Corresponding to every individual process there is a reverse process, and in a state of equilibrium the average rate of every process is equal to the average rate of its reverse process.<ref>[http://www.pnas.org/content/11/3/179.full.pdf+html Gilbert N. Lewis "A new principle of equilibrium" Proceedings of the National Academy of Sciences '''11''' pp. 179-183 (1925)]''</ref></blockquote>
<blockquote>''Corresponding to every individual process there is a reverse process, and in a state of equilibrium the average rate of every process is equal to the average rate of its reverse process.<ref>[http://www.pnas.org/content/11/3/179.full.pdf+html Gilbert N. Lewis "A new principle of equilibrium" Proceedings of the National Academy of Sciences '''11''' pp. 179-183 (1925)]''</ref></blockquote>


According to Ter Haar <ref>[http://dx.doi.org/10.1103/RevModPhys.27.289 D. Ter Haar  "Foundations of Statistical Mechanics", Reviews of Modern Physics '''27''' pp. 289-338 (1955)] Appendix VII</ref> the essence of the detailed balance is: <blockquote>...at equilibrium the number of processes destroying situation <math>A</math> and creating situation <math>B</math> will be equal to the number of processes producing <math>A</math> and destroying <math>B</math></blockquote>
According to Ter Haar <ref>[http://dx.doi.org/10.1103/RevModPhys.27.289 D. Ter Haar  "Foundations of Statistical Mechanics", Reviews of Modern Physics '''27''' pp. 289-338 (1955)] Appendix VII</ref> the essence of the detailed balance is: "...at equilibrium the number of processes destroying situation <math>A</math> and creating situation <math>B</math> will be equal to the number of processes producing <math>A</math> and destroying <math>B</math>.


The principle of detailed balance was explicitly introduced for collisions by [[Ludwig Eduard Boltzmann |Ludwig Boltzmann]]. In 1872, he proved his [[H-theorem]] using this principle <ref name = "Boltzmann1872">Ludwig Boltzmann "Lectures on Gas Theory" (original title "Vorlesungen uber Gastheorie") (1896) ISBN 0486684555 </ref>.  
The principle of detailed balance was explicitly introduced for collisions by [[Ludwig Eduard Boltzmann |Ludwig Boltzmann]]. In 1872, he proved his [[H-theorem]] using this principle <ref name = "Boltzmann1872">Ludwig Boltzmann "Lectures on Gas Theory" (original title "Vorlesungen uber Gastheorie") (1896) ISBN 0486684555 </ref>.  
Line 9: Line 9:
In 1901, R. Wegscheider introduced the principle of detailed balance for chemical kinetics.<ref>[http://dx.doi.org/10.1007/BF01517498 Rud Wegscheider "Über simultane Gleichgewichte und die Beziehungen zwischen Thermodynamik und Reactionskinetik homogener Systeme",  Monatshefte für Chemie '''22''' pp. 849-906 (1901)]</ref> In particular, he demonstrated that the irreversible cycles <math>A_1 \to A_2 \to ... \to A_n \to A_1</math> are impossible and found explicitly the relations between kinetic constants that follow from the principle of detailed balance.
In 1901, R. Wegscheider introduced the principle of detailed balance for chemical kinetics.<ref>[http://dx.doi.org/10.1007/BF01517498 Rud Wegscheider "Über simultane Gleichgewichte und die Beziehungen zwischen Thermodynamik und Reactionskinetik homogener Systeme",  Monatshefte für Chemie '''22''' pp. 849-906 (1901)]</ref> In particular, he demonstrated that the irreversible cycles <math>A_1 \to A_2 \to ... \to A_n \to A_1</math> are impossible and found explicitly the relations between kinetic constants that follow from the principle of detailed balance.


See also <ref name=vanKampen1992>van Kampen, N.G. "Stochastic Processes in Physics and Chemistry", Elsevier Science (1992).</ref><ref name=Yab1991>Yablonskii, G.S., Bykov, V.I.,  Gorban, A.N., Elokhin, V.I. (1991), Kinetic Models of Catalytic Reactions, Amsterdam, The Netherlands: Elsevier.</ref><ref>Lifshitz, E.M., Pitaevskii, L.P., Physical kinetics (1981)London: Pergamon. Vol. 10 of the Course of Theoretical Physics(3rd Ed).</ref>


==Microscopic background==
==Microscopic background==
Line 32: Line 33:
:<math>\pi(s') P(s',s) = \pi(s) P(s,s')\,.</math>
:<math>\pi(s') P(s',s) = \pi(s) P(s,s')\,.</math>


A Markov process that has detailed balance is said to be a ''reversible Markov process'' or ''reversible Markov chain'' <ref name=OHagan />.
A Markov process that has detailed balance is said to be a '''reversible Markov process''' or '''reversible Markov chain'''.<ref name=OHagan />


The detailed balance condition is stronger than that required merely for a stationary distribution; that is, there are Markov processes with stationary distributions that do not have detailed balance.  Detailed balance implies that, around any closed cycle of states, there is no net flow of probability. For example, it implies that, for all ''a'', ''b'' and ''c'',
The detailed balance condition is stronger than that required merely for a stationary distribution; that is, there are Markov processes with stationary distributions that do not have detailed balance.  Detailed balance implies that, around any closed cycle of states, there is no net flow of probability. For example, it implies that, for all ''a'', ''b'' and ''c'',
Line 43: Line 44:


==Detailed balance and the entropy growth==
==Detailed balance and the entropy growth==
For many systems that treat physical and chemical kinetics, detailed balance provides ''sufficient conditions'' for the [[entropy]] growth in isolated systems. For example, the famous Boltzmann H-theorem<ref name = "Boltzmann1872"/> states that, according to the [[Boltzmann equation]], the principle of detailed balance implies positivity of the entropy production. The Boltzmann formula (1872) for the entropy production in the rarefied gas kinetics with detailed balance<ref name = "Boltzmann1872"/><ref name=Tolman1938/> served as a prototype of many similar formulas for dissipation in mass action kinetics
For many systems of physical and chemical kinetics, detailed balance provides ''sufficient conditions'' for the [[entropy]] growth in isolated systems. For example, the famous Boltzmann H-theorem<ref name = "Boltzmann1872"/> states that, according to the Boltzmann equation, the principle of detailed balance implies positivity of the entropy production. The Boltzmann formula (1872) for the entropy production in the rarefied gas kinetics with detailed balance<ref name = "Boltzmann1872"/><ref name=Tolman1938/> served as a prototype of many similar formulas for dissipation in mass action kinetics<ref>Volpert, A.I., Khudyaev, S.I. (1985), Analysis in classes of discontinuous functions and equations of mathematical physics. Dordrecht, The Netherlands: Nijoff. (Translation from the 1st Russian ed., Moscow, Nauka publ., 1975.)</ref> and generalized mass action kinetics<ref>Schuster, S., Schuster R. (1989). [http://www.springerlink.com/content/g3m2177v4344065q/ A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation.] J. Math. Chem, 3 (1), 25-42.</ref> with detailed balance.
<ref>A.I. Volpert and  S. I. Khudyaev "Analysis in classes of discontinuous functions and equations of mathematical physics", Springer (1985) ISBN 978-90-247-3109-1 </ref>  
and generalised mass action kinetics
<ref>[http://dx.doi.org/10.1007/BF01171883 Stefan Schuster and Ronny Schuster "A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation", Journal of Mathematical Chemistry '''3''' pp. 25-42 (1989)]</ref>
with detailed balance.


Nevertheless, the principle of detailed balance is not necessary for entropy growth. For example, in the linear irreversible cycle <math>A_1 \to A_2 \to A_3 \to A_1</math> the entropy production is positive but the principle of detailed balance does not hold.  
Nevertheless, the principle of detailed balance is not necessary for the entropy growth. For example, in the linear irreversible cycle <math>A_1 \to A_2 \to A_3 \to A_1</math> the entropy production is positive but the principle of detailed balance does not hold.  


The principle of detailed balance is a ''sufficient but not necessary condition'' for the entropy growth in the Boltzmann kinetics. These relations between the principle of detailed balance and the [[Second law of thermodynamics]] were clarified in 1887 when Hendrik Lorentz objected the Boltzmann H-theorem for polyatomic gases
The principle of detailed balance is a ''sufficient but not necessary condition'' for the entropy growth in the Boltzmann kinetics. These relations between the principle of detailed balance and the Second law of thermodynamics were clarified in 1887 when Hendrik Lorentz objected the Boltzmann H-theorem for polyatomic gases.<ref>Lorentz H.-A. (1887) Üeber das Gleichgewicht der lebendigen Kraft unter Gasmolekülen. S.A.W. [Sitzungsberichte der Kgl. Akademie der Wissenschaften in Wien. Vienne.] 95, 115-152.</ref> Lorentz stated that the principle of detailed balance is not applicable to collisions of  polyatomic molecules. Boltzmann immediately invented a new, more general condition sufficient for the entropy growth.<ref name=Boltzmann1887>Boltzmann L. (1887) Neuer Beweis zweier Sätze über das Wärmegleichgewicht unter mehratomigen Gasmolekülen. S.A.W. [Sitzungsberichte der Kgl. Akademie der Wissenschaften in Wien. Vienne.] 95, 153-164.</ref> In particular, this condition is valid for all Markov processes without any relation to time-reversibility. The entropy growth in all Markov processes was explicitely proved later.<ref>Shannon, C.E. (1948) A Mathematical Theory of Communication, Bell System Technical Journal, Vol. 27, pp.&nbsp;379–423, 623–656. [http://www.alcatel-lucent.com/bstj/vol27-1948/articles/bstj27-3-379.pdf] [http://www.alcatel-lucent.com/bstj/vol27-1948/articles/bstj27-4-623.pdf]</ref> These theorems may be considered as simplifications of the Boltzmann result.  Later, this condition was discussed as the "cyclic balance" condition (because it holds for irreversible cycles) or the "semi-detailed balance" or the "complex balance". In 1981, Carlo Cercignani and Maria Lampis proved that the Lorenz arguments were wrong and the principle of detailed balance is valid for polyatomic molecules.<ref>Cercignani, C. and Lampis, M. (1981). On the H-theorem for polyatomic gases, Journal of Statistical Physics, V. 26 (4), 795-801.</ref> Nevertheless, the extended semi-detailed balance conditions invented by Boltzmann in this discussion remain the remarkable generalization of the detailed balance.
<ref>Hendrik Antoon Lorentz "Üeber das Gleichgewicht der lebendigen Kraft unter Gasmolekülen" S.A.W. (Sitzungsberichte der Kgl. Akademie der Wissenschaften in Wien. Vienne) '''95''' pp. 115-152 (1887)</ref>.
Lorentz stated that the principle of detailed balance is not applicable to collisions of  polyatomic molecules. Boltzmann immediately invented a new, more general condition sufficient for the entropy growth.
<ref name=Boltzmann1887>L. Boltzmann "Neuer Beweis zweier Sätze über das Wärmegleichgewicht unter mehratomigen Gasmolekülen" S.A.W. (Sitzungsberichte der Kgl. Akademie der Wissenschaften in Wien. Vienne) '''95''' pp. 153-164 (1887)</ref>.
In particular, this condition is valid for all Markov processes without any relation to time-reversibility. The entropy growth in all Markov processes was explicitly proved later
<ref>[http://www.alcatel-lucent.com/bstj/vol27-1948/articles/bstj27-3-379.pdf Claude Elwood Shannon "A Mathematical Theory of Communication", Bell System Technical Journal '''27'''  July pp. 379-423 (1948)]</ref>
<ref>[http://www.alcatel-lucent.com/bstj/vol27-1948/articles/bstj27-4-623.pdf Claude Elwood Shannon "A Mathematical Theory of Communication", Bell System Technical Journal '''27'''  October pp. 623-656 (1948)]</ref>.
These theorems may be considered as simplifications of the Boltzmann result.  Later, this condition was discussed as the "cyclic balance" condition (because it holds for irreversible cycles) or the "semi-detailed balance" or the "complex balance". In 1981, Carlo Cercignani and Maria Lampis proved that the Lorenz arguments were wrong and the principle of detailed balance is valid for polyatomic molecules
<ref>[http://dx.doi.org/10.1007/BF01010940 Carlo Cercignani and Maria Lampis "On the H-theorem for polyatomic gases", Journal of Statistical Physics '''26''' pp. 795-801 (1981)]</ref>.
Nevertheless, the extended semi-detailed balance conditions invented by Boltzmann in this discussion remain the generalisation of detailed balance.


==Wegscheider's conditions for the generalized mass action law==
==Wegscheider's conditions for the generalized mass action law==
Line 72: Line 60:
The ''stoichiometric matrix'' is <math>\boldsymbol{\Gamma}=(\gamma_{ri})</math>, <math>\gamma_{ri}=\beta_{ri}-\alpha_{ri}</math> (gain minus loss). The ''stoichiometric vector'' <math>\gamma_r</math> is the ''r''th row of <math>\boldsymbol{\Gamma}</math> with coordinates <math>\gamma_{ri}=\beta_{ri}-\alpha_{ri}</math>.
The ''stoichiometric matrix'' is <math>\boldsymbol{\Gamma}=(\gamma_{ri})</math>, <math>\gamma_{ri}=\beta_{ri}-\alpha_{ri}</math> (gain minus loss). The ''stoichiometric vector'' <math>\gamma_r</math> is the ''r''th row of <math>\boldsymbol{\Gamma}</math> with coordinates <math>\gamma_{ri}=\beta_{ri}-\alpha_{ri}</math>.


According to the ''generalised mass action law'', the reaction rate for an elementary reaction is
According to the ''generalized mass action law'', the reaction rate for an elementary reaction is


:<math>w_r=k_r \prod_{i=1}^n a_i^{\alpha_{ri}} \, ,</math>
:<math>w_r=k_r \prod_{i=1}^n a_i^{\alpha_{ri}} \, ,</math>
Line 84: Line 72:
<math>\sum_i \gamma_{ri} x_i = \ln k_r^+-\ln k_r^-=\ln K_r </math>
<math>\sum_i \gamma_{ri} x_i = \ln k_r^+-\ln k_r^-=\ln K_r </math>


is solvable (<math>x_i=\ln a_i^{\rm eq}</math>). The following classical result gives the necessary and sufficient conditions for the existence of the positive equilibrium <math>a_i^{\rm eq}>0</math> with  detailed balance <ref name=Yab1991>G. S. Yablonskii, V. I. Bykov, V. I. Elokhin, and A.N. Gorban "Kinetic Models of Catalytic Reactions", Elsevier (1991) ISBN 978-0-444-88802-0</ref>.
is solvable (<math>x_i=\ln a_i^{\rm eq}</math>). The following classical result gives the necessary and sufficient conditions for the existence of the positive equilibrium <math>a_i^{\rm eq}>0</math> with  detailed balance (see, for example, the textbook<ref name=Yab1991/>).


Two conditions are sufficient and necessary in order to solve the system of detailed balance equations:
Two conditions are sufficient and necessary for solvability of the system of detailed balance equations:
# If <math>k_r^+>0</math> then <math>k_r^->0</math> (reversibility);
# If <math>k_r^+>0</math> then <math>k_r^->0</math> (reversibility);
# For any solution <math>\boldsymbol{\lambda}=(\lambda_r)</math> of the system
# For any solution <math>\boldsymbol{\lambda}=(\lambda_r)</math> of the system
:<math>\boldsymbol{\lambda \Gamma} =0  \;\; \left(\mbox{i.e.}\;\; \sum_r \lambda_r \gamma_{ri}=0\;\; \mbox{for all} \;\; i\right)</math>
:<math>\boldsymbol{\lambda \Gamma} =0  \;\; \left(\mbox{i.e.}\;\; \sum_r \lambda_r \gamma_{ri}=0\;\; \mbox{for all} \;\; i\right)</math>
the Wegscheider's identity
the Wegscheider's identity<ref name=GorbanYablonsky2011>Gorban, A.N., Yablonsky, G.S. (2011) [http://arxiv.org/PS_cache/arxiv/pdf/1101/1101.5280v3.pdf Extended detailed balance for systems with irreversible reactions], Chemical Engineering Science 66, 5388–5399.</ref> holds:
<ref name=GorbanYablonsky2011>[http://dx.doi.org/10.1016/j.ces.2011.07.054 A. N. Gorban and G. S. Yablonsky "Extended detailed balance for systems with irreversible reactions", Chemical Engineering Science '''66''' pp. 5388-5399 (2011)]</ref>
holds:
:<math>\prod_{r=1}^m    (k_r^+)^{\lambda_r}=\prod_{r=1}^m    (k_r^-)^{\lambda_r} \, .</math>
:<math>\prod_{r=1}^m    (k_r^+)^{\lambda_r}=\prod_{r=1}^m    (k_r^-)^{\lambda_r} \, .</math>


''Remark.'' It is sufficient to use in the Wegscheider conditions a basis of solutions of the system <math>\boldsymbol{\lambda \Gamma} =0 </math>.
''Remark.'' It is sufficient to use in the Wegscheider conditions a basis of solutions of the system <math>\boldsymbol{\lambda \Gamma} =0 </math>.


In particular, for any cycle in the monomolecular (linear) reactions the product of the reaction rate constants in the clockwise direction is equal to the product of the reaction rate constants in the counter-clockwise direction. The same condition is valid for the reversible Markov processes (it is equivalent to the "no net flow" condition).
In particular, for any cycle in the monomolecular (linear) reactions the product of the reaction rate constants in the clockwise direction is equal to the product of the reaction rate constants in the counterclockwise direction. The same condition is valid for the reversible Markov processes (it is equivalent to the "no net flow" condition).


A simple non-linear example gives us a linear cycle supplemented by one non-linear step <ref name=GorbanYablonsky2011/>:  
A simple nonlinear example gives us a linear cycle supplemented by one nonlinear step<ref name=GorbanYablonsky2011/>:  
# <math>A_1 \rightleftharpoons A_2</math>
# <math>A_1 \rightleftharpoons A_2</math>
# <math>A_2 \rightleftharpoons A_3 </math>
# <math>A_2 \rightleftharpoons A_3 </math>
Line 109: Line 95:
:<math>\gamma_1+\gamma_2+\gamma_3=0</math> and <math>\gamma_3+\gamma_4-\gamma_2=0</math>.
:<math>\gamma_1+\gamma_2+\gamma_3=0</math> and <math>\gamma_3+\gamma_4-\gamma_2=0</math>.


The computational aspect of the Wegscheider conditions was studied by D. Colquhoun et al.  
The computational aspect of the Wegscheider conditions was studied by D. Colquhoun with co-authors.<ref>Colquhoun, D., Dowsland, K.A., Beato, M., and Plested, A.J.R. (2004) [http://www.ucl.ac.uk/Pharmacology/dc-bits/colquhoun-biophysj-04.pdf How to Impose Microscopic Reversibility in Complex Reaction Mechanisms], Biophysical 86, June 2004, 3510–3518</ref>
<ref>[http://dx.doi.org/10.1529/biophysj.103.038679 David Colquhoun, Kathryn A. Dowsland, Marco Beato and Andrew J.R. Plested "How to Impose Microscopic Reversibility in Complex Reaction Mechanisms", Biophysical Journal '''86''' pp. 3510-3518 (2004)]</ref>.


The Wegscheider conditions demonstrate that, whereas the principle of detailed balance states a local property of equilibrium, it implies the relations between the kinetic constants that are valid for all states far from equilibrium. This is possible because a kinetic law is known and relations between the rates of the elementary processes at equilibrium can be transformed into relations between kinetic constants which are used globally. For the Wegscheider conditions this kinetic law is the law of mass action (or the generalised law of mass action).
The Wegscheider conditions demonstrate that whereas the principle of detailed balance states a local property of equilibrium, it implies the relations between the kinetic constants that are valid for all states far from equilibrium. This is possible because a kinetic law is known and relations between the rates of the elementary processes at equilibrium can be transformed into relations between kinetic constants which are used globally. For the Wegscheider conditions this kinetic law is the law of mass action (or the generalized law of mass action).


==Dissipation in systems with detailed balance==
==Dissipation in systems with detailed balance==
To describe dynamics of the systems that obey the generalised mass action law, one has to represent the activities as functions of the concentrations <math>c_j</math> and the [[temperature]]. For this purpose, let us represent the activity in terms of the [[chemical potential]]:


:<math>a_i = \exp\left (\frac{\mu_i - \mu^{\Theta}_i}{RT}\right )</math>
To describe dynamics of the systems that obey the generalized mass action law, one has to represent the activities as functions of  the concentrations ''c<sub>j</sub>'' and temperature. For this purpose, let us the representation of the activity through the chemical potential:
:<math>a_i = \exp\left (\frac{\mu_i - \mu^{\ominus}_i}{RT}\right )</math>
where ''μ<sub>i</sub>'' is the chemical potential of the species under the conditions of interest, ''μ''<sup><s>o</s></sup><sub>''i''</sub> is the chemical potential of that species in the chosen standard state, ''R'' is the gas constant and ''T'' is the thermodynamic temperature. 
The chemical potential can be represented as a function of ''c'' and ''T'', where ''c'' is the vector of concentrations with components  ''c<sub>j</sub>''. For the ideal systems,  <math>\mu_i=RT\ln c_i+\mu^{\ominus}_i</math> and <math>a_j=c_j</math>: the activity is the concentration and the generalized mass action law is the usual law of mass action.


where <math>\mu_i</math> is the chemical potential of the species under the conditions of interest, <math>\mu^{\Theta}_i</math> is the chemical potential of that species in the chosen standard state, <math>R</math> is the [[Molar gas constant |gas constant]] and <math>T</math> is the thermodynamic temperature. 
Let us consider a system in isothermal  (''T''=const) isochoric (the volume ''V''=const) condition. For these conditions, the Helmholtz free energy ''F(T,V,N)'' measures the “useful” work obtainable from a system. It is a functions of the temperature ''T'', the volume ''V'' and the amounts of chemical components ''N<sub>j</sub>'' (usually measured in moles), ''N'' is the vector with components ''N<sub>j</sub>''. For the ideal systems, <math>F=RT \sum_i N_i \left(\ln\left(\frac{N_i}{V}\right)-1+\frac{\mu^{\ominus}_i(T)}{RT}\right) </math>
The chemical potential can be represented as a function of <math>c</math> and <math>T</math>, where <math>c</math> is the vector of concentrations with components <math>c_j</math>. For ideal systems, <math>\mu_i=RT\ln c_i+\mu^{\Theta}_i</math> and <math>a_j=c_j</math>: the activity is the concentration.


For an [[Canonical ensemble |isothermal, isochoric system]] the [[Helmholtz energy function]] <math>A(N, V, T)</math> measures the "useful" [[work]] obtainable from a system. For an ideal system one has
The chemical potential is a partial derivative: <math> \mu_i=\partial F(T,V,N)/\partial N_j</math>.
 
:<math>A=RT \sum_i N_i \left(\ln\left(\frac{N_i}{V}\right)-1+\frac{\mu^{\Theta}_i(T)}{RT}\right) </math>
 
The chemical potential is given by the partial derivative
 
:<math> \mu_i=\frac{\partial A(N,V,T)}{\partial N_j}.</math>


The chemical kinetic equations are  
The chemical kinetic equations are  
:<math>\frac{d N_i}{d t}=V \sum_r \gamma_{ri}(w^+_r-w^-_r) .</math>
:<math>\frac{d N_i}{d t}=V \sum_r \gamma_{ri}(w^+_r-w^-_r) .</math>


If the principle of detailed balance is valid, then for any value of <math>T</math> there exists a positive point of detailed balance <math>c^{\mathrm {eq}}</math>:
If the principle of detailed balance is valid then for any value of ''T'' there exists a positive point of detailed balance ''c''<sup>eq</sup>:
 
:<math>w^+_r(c^{\rm eq},T)=w^-_r(c^{\rm eq},T)=w^{\rm eq}_r</math>
:<math>w^+_r(c^{\mathrm {eq}},T)=w^-_r(c^{\rm eq},T)=w^{\rm eq}_r</math>
Elementary algebra gives
 
which leads to
 
:<math>w^+_r=w^{\rm eq}_r \exp \left(\sum_i \frac{\alpha_{ri}(\mu_i-\mu^{\rm eq}_i)}{RT}\right); \;\; w^-_r=w^{\rm eq}_r \exp \left(\sum_i \frac{\beta_{ri}(\mu_i-\mu^{\rm eq}_i)}{RT}\right);</math>
:<math>w^+_r=w^{\rm eq}_r \exp \left(\sum_i \frac{\alpha_{ri}(\mu_i-\mu^{\rm eq}_i)}{RT}\right); \;\; w^-_r=w^{\rm eq}_r \exp \left(\sum_i \frac{\beta_{ri}(\mu_i-\mu^{\rm eq}_i)}{RT}\right);</math>
where <math>\mu^{\rm eq}_i=\mu_i(c^{\rm eq},T)</math>
where <math>\mu^{\rm eq}_i=\mu_i(c^{\rm eq},T)</math>


For the dissipation one obtains
For the dissipation we obtain from these formulas:


:<math>\frac{d F}{d t}=\sum_i \frac{\partial F(T,V,N)}{\partial N_i} \frac{d N_i}{d t}=\sum_i \mu_i \frac{d N_i}{d t} = -VRT \sum_r (\ln w_r^+-\ln w_r^-) (w_r^+-w_r^-) \leq 0</math>
:<math>\frac{d F}{d t}=\sum_i \frac{\partial F(T,V,N)}{\partial N_i} \frac{d N_i}{d t}=\sum_i \mu_i \frac{d N_i}{d t} = -VRT \sum_r (\ln w_r^+-\ln w_r^-) (w_r^+-w_r^-) \leq 0</math>
The inequality holds because ln is a monotone function and, hence, the expressions <math>\ln w_r^+-\ln w_r^-</math> and <math>w_r^+-w_r^-</math> have always the same sign.


The inequality holds because the logarithm function is monotonic, hence, the expressions <math>\ln w_r^+-\ln w_r^-</math> and <math>w_r^+-w_r^-</math> always have the same sign.
Similar inequalities<ref name=Yab1991/> are valid for other classical conditions for the closed systems and the corresponding characteristic functions: for isothermal isobaric conditions the Gibbs free energy decreases, for the isochoric systems with the constant internal energy (isolated systems) the entropy increases as well as for isobaric systems with the constant enthalpy.


Similar inequalities <ref name=Yab1991/> are valid for other classical conditions for the closed systems and the corresponding characteristic functions: for [[Isothermal-isobaric ensemble |isothermal isobaric conditions]] the [[Gibbs energy function]]  decreases, for [[Microcanonical ensemble |isochoric systems with  constant internal energy]]  the entropy increases as well as for [[Isoenthalpic–isobaric ensemble |isobaric systems with the constant enthalpy]].
== Onsager reciprocal relations and detailed balance ==


== Onsager reciprocal relations and detailed balance ==
Let the principle of detailed balance be valid. Then, in the linear approximation near equilibrium the reaction rates for the generalized mass action law are
Let the principle of detailed balance be valid. Then, in the linear approximation near equilibrium the reaction rates for the generalized mass action law are
:<math>w^+_r=w^{\rm eq}_r \left(1+\sum_i \frac{\alpha_{ri}(\mu_i-\mu^{\rm eq}_i)}{RT}\right); \;\; w^-_r=w^{\rm eq}_r  \left(1+ \sum_i \frac{\beta_{ri}(\mu_i-\mu^{\rm eq}_i)}{RT}\right);</math>
:<math>w^+_r=w^{\rm eq}_r \left(1+\sum_i \frac{\alpha_{ri}(\mu_i-\mu^{\rm eq}_i)}{RT}\right); \;\; w^-_r=w^{\rm eq}_r  \left(1+ \sum_i \frac{\beta_{ri}(\mu_i-\mu^{\rm eq}_i)}{RT}\right);</math>
Line 171: Line 146:


==Semi-detailed balance==
==Semi-detailed balance==
To formulate the principle of semi-detailed balance, it is convenient to count the direct and inverse elementary reactions separately. In this case, the kinetic equations have the form:
To formulate the principle of semi-detailed balance, it is convenient to count the direct and inverse elementary reactions separately. In this case, the kinetic equations have the form:
:<math>\frac{d N_i}{d t}=V\sum_r \gamma_{ri} w_r=V\sum_r (\beta_{ri}-\alpha_{ri})w_r </math>
:<math>\frac{d N_i}{d t}=V\sum_r \gamma_{ri} w_r=V\sum_r (\beta_{ri}-\alpha_{ri})w_r </math>
Let us use the notations <math>\alpha_r=\alpha_{ri}</math>, <math>\beta_r=\beta_{ri}</math> for the input and the output vectors of the stoichiometric coefficients of the ''r''th elementary reaction. Let <math>Y</math> be the set of all these vectors <math>\alpha_r, \beta_r</math>.


Let us use the notation <math>\alpha_r=\alpha_{ri}</math>, <math>\beta_r=\beta_{ri}</math> for the input and the output vectors of the stoichiometric coefficients of the ''r''th elementary reaction. Let <math>Y</math> be the set of all these vectors <math>\alpha_r, \beta_r</math>.
For each <math>\nu \in Y</math>, let us define two sets of numbers:
For each <math>\nu \in Y</math>, let us define two sets of numbers:
:<math>R_{\nu}^+=\{r|\alpha_r=\nu  \}; \;\;\; R_{\nu}^-=\{r|\beta_r=\nu \}</math>
:<math>R_{\nu}^+=\{r|\alpha_r=\nu  \}; \;\;\; R_{\nu}^-=\{r|\beta_r=\nu \}</math>


<math>r \in R_{\nu}^+</math> if and only if <math>\nu</math> is the vector of the input stoichiometric coefficients <math>\alpha_r</math> for the ''r''th elementary reaction;<math>r \in R_{\nu}^-</math> if and only if <math>\nu</math> is the vector of the output stoichiometric coefficients <math>\beta_r</math> for the ''r''th elementary reaction.
<math>r \in R_{\nu}^+</math> if and only if <math>\nu</math> is the vector of the input stoichiometric coefficients <math>\alpha_r</math> for the ''r''th elementary reaction;<math>r \in R_{\nu}^-</math> if and only if <math>\nu</math> is the vector of the output stoichiometric coefficients <math>\beta_r</math> for the ''r''th elementary reaction.


The principle of ''semi-detailed balance'' implies that when in equilibrium, for every <math>\nu \in Y</math>
The principle of '''semi-detailed balance''' means that in equilibrium the semi-detailed balance condition holds: for every <math>\nu \in Y</math>
:<math>\sum_{r\in R_{\nu}^+}w_r=\sum_{r\in R_{\nu}^+}w_r</math>
:<math>\sum_{r\in R_{\nu}^+}w_r=\sum_{r\in R_{\nu}^+}w_r</math>


The semi-detailded balance condition is sufficient for the stationarity: it implies that   
The semi-detailded balance condition is sufficient for the stationarity: it implies that   
:<math>\frac{d N}{dt}=V \sum_r \gamma_r w_r=0.</math>
:<math>\frac{d N}{dt}=V \sum_r \gamma_r w_r=0</math>.


For the Markov kinetics the semi-detailed balance condition is simply the elementary balance equation and holds for any steady state. For the non-linear mass action law it is, in general, a sufficient but not necessary condition for stationarity.
For the Markov kinetics the semi-detailed balance condition is just the elementary balance equation and holds for any steady state. For the nonlinear mass action law it is, in general, sufficient but not necessary condition for stationarity.
The semi-detailed balance condition is weaker than that of detailed balance: if the principle of detailed balance holds then the condition of semi-detailed balance also holds.
For systems that obey the generalised mass action law the semi-detailed balance condition is sufficient for the dissipation inequality <math>d F/ dt \geq 0</math> (for the Helmholtz free energy under isothermal isochoric conditions and for the dissipation inequalities under other classical conditions for the corresponding thermodynamic potentials).  


Boltzmann introduced the semi-detailed balance condition for collisions in 1887 <ref name=Boltzmann1887 /> and proved that it guaranties the positivity of the entropy production. For chemical kinetics, this condition (as the ''complex balance'' condition) was introduced by Horn and Jackson in 1972
The semi-detailed balance condition is weaker than the detailed balance one: if the principle of detailed balance holds then the condition of semi-detailed balance also holds.
<ref name="HornJackson1972">[http://dx.doi.org/10.1007/BF00251225 F. Horn and R. Jackson "General mass action kinetics", Archive for Rational Mechanics and Analysis '''47''' pp. 81-116 (1972)]</ref>.


The microscopic backgrounds for the semi-detailed balance were found in the Markov micro-kinetics of the intermediate compounds that are present in small amounts and whose concentrations are in quasiequilibrium with the main components
For systems that obey the generalized mass action law the semi-detailed balance condition is sufficient for the dissipation inequality <math>d F/ dt \geq 0</math> (for the Helmholtz free energy under isothermal isochoric conditions and for the dissipation inequalities under other classical conditions for the corresponding thermodynamic potentials).
<ref>Ernst Carl Gerlach Stueckelberg "Theoreme H et unitarite de S", Helvetica Physica Acta '''25''' pp. 577-580 (1952)</ref>.
 
Under these microscopic assumptions, the semi-detailed balance condition becomes the balance equation for the Markov microkinetics according to the Michaelis-Menten-Stueckelberg theorem<ref name="GorbanShahzad2011">[http://dx.doi.org/10.3390/e13050966 Alexander N. Gorban and Muhammad Shahzad "The Michaelis-Menten-Stueckelberg Theorem", Entropy '''13''' pp. 966-1019 (2011)]</ref>.
Boltzmann introduced the semi-detailed balance condition for collisions in 1887<ref name=Boltzmann1887 /> and proved that it guaranties the positivity of the entropy production. For chemical kinetics, this condition (as the ''complex balance'' condition) was inroduced by Horn and Jackson in 1972.<ref name="HornJackson1972">''Horn, F., Jackson, R.'' (1972) General mass action kinetics. Arch. Ration. Mech. Anal. 47, 87-116.</ref>
 
The microscopic backgrounds for the semi-detailed balance were found in the Markov microkinetics of the intermediate compounds that are present in small amounts and whose concentrations are in quasiequilibrium with the main components.<ref>''Stueckelberg, E.C.G.'' (1952) Theoreme ''H'' et unitarite de ''S''. Helv. Phys. Acta  25, 577-580</ref> Under these microscopic assumptions, the semi-detailed balance condition is just the balance equation for the Markov microkinetics according to the '''Michaelis-Menten-Stueckelberg theorem.<ref name="GorbanShahzad2011">''Gorban, A.N., Shahzad, M.'' (2011) [http://arxiv.org/pdf/1008.3296v3 The Michaelis-Menten-Stueckelberg Theorem.] Entropy 13, no. 5, 966-1019.</ref>


== Dissipation in systems with semi-detailed balance ==
== Dissipation in systems with semi-detailed balance ==
Line 223: Line 196:
== Detailed balance for systems with irreversible reactions ==
== Detailed balance for systems with irreversible reactions ==


Detailed balance states that in equilibrium each elementary process is equilibrated by its reverse process and required reversibility of all elementary processes. For many real physico-chemical complex systems (e.g. homogeneous combustion, heterogeneous catalytic oxidation, most enzyme reactions etc), detailed mechanisms include both reversible and irreversible reactions. If one represents irreversible reactions as limits of reversible steps, then it become obvious that not all reaction mechanisms with irreversible reactions can be obtained as limits of systems or reversible reactions with detailed balance. For example, the irreversible cycle <math>A_1 \to A_2 \to A_3 \to A_1</math> cannot be obtained as such a limit but the reaction mechanism <math>A_1 \to A_2 \to A_3 \leftarrow A_1</math> can <ref>[http://dx.doi.org/10.1016/0009-2509(71)83005-1 Chieh Chu "Gas absorption accompanied by a system of first-order reactions", Chemical Engineering Science '''26''' pp. 305–312 (1971)]</ref>.
Detailed balance states that in equilibrium each elementary process is equilibrated by its reverse process and required reversibility of all elementary processes. For many real physico-chemical complex systems (e.g. homogeneous combustion, heterogeneous catalytic oxidation, most enzyme reactions etc), detailed mechanisms include both reversible and irreversible reactions. If one represents irreversible reactions as limits of reversible steps, then it become obvious that not all reaction mechanisms with irreversible reactions can be obtained as limits of systems or reversible reactions with detailed balance. For example, the irreversible cycle <math>A_1 \to A_2 \to A_3 \to A_1</math> cannot be obtained as such a limit but the reaction mechanism <math>A_1 \to A_2 \to A_3 \leftarrow A_1</math> can.<ref>Chu, Ch. (1971), Gas absorption accompanied by a system of first-order reactions, Chem. Eng. Sci. 26(3), 305-312.</ref>
 


''A system of reactions with some irreversible reactions is a limit of systems with detailed balance when some constants tend to zero if and only if (i) the reversible part of this system satisfies the principle of detailed balance and (ii) the convex hull of the stoichiometric vectors of the irreversible reactions has empty intersection with the linear span of the stoichiometric vectors of the reversible reactions.''<ref name=GorbanYablonsky2011/> Physically, the last condition means that the irreversible reactions cannot be included in oriented cyclic pathways.
''A system of reactions with some irreversible reactions is a limit of systems with detailed balance when some constants tend to zero if and only if (i) the reversible part of this system satisfies the principle of detailed balance and (ii) the convex hull of the stoichiometric vectors of the irreversible reactions has empty intersection with the linear span of the stoichiometric vectors of the reversible reactions.''<ref name=GorbanYablonsky2011/> Physically, the last condition means that the irreversible reactions cannot be included in oriented cyclic pathways.
Line 230: Line 202:
==References==
==References==
<references/>
<references/>
;Related reading
'''Related reading'''
*[http://en.wikipedia.org/wiki/Detailed_balance Detailed balance] in Wikipedia
*[http://dx.doi.org/10.1063/1.477973 Vasilios I. Manousiouthakis and Michael W. Deem "Strict detailed balance is unnecessary in Monte Carlo simulation", Journal of Chemical Physics '''110''' pp. 2753- (1999)]
*[http://dx.doi.org/10.1063/1.477973 Vasilios I. Manousiouthakis and Michael W. Deem "Strict detailed balance is unnecessary in Monte Carlo simulation", Journal of Chemical Physics '''110''' pp. 2753- (1999)]
*van Kampen, N.G. "Stochastic Processes in Physics and Chemistry", Elsevier Science (1992) ISBN 0444893490
*E. M. Lifshitz, and  L. P. Pitaevskii  "Physical kinetics" Butterworth-Heinemann (1981) ISBN 0750626356
;External links
*[http://en.wikipedia.org/wiki/Detailed_balance Detailed balance] in Wikipedia
[[category: statistical mechanics]]
[[category: statistical mechanics]]
[[category: Non-equilibrium thermodynamics]]
[[category: Non-equilibrium thermodynamics]]
Please note that all contributions to SklogWiki are considered to be released under the Creative Commons Attribution Non-Commercial Share Alike (see SklogWiki:Copyrights for details). If you do not want your writing to be edited mercilessly and redistributed at will, then do not submit it here.
You are also promising us that you wrote this yourself, or copied it from a public domain or similar free resource. Do not submit copyrighted work without permission!

To edit this page, please answer the question that appears below (more info):

Cancel Editing help (opens in new window)