Proteins: Difference between revisions

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==Potentials and models==
==Potentials and models==
*[[CABS model]]
*[[Chen and Imamura model]]
*[[DFIRE model]]
*[[Go potential]]
*[[Go potential]]
*[[DFIRE model]]
*[[Irbäck hydrogen bond model]]
*[[Irbäck hydrogen bond model]]
*[[Chen and Imamura model]]
*[[CABS model]]
*[[Nanias model]]
*[[Nanias model]]
*[[Patchy particles]]
*[[TE-13 model]]
*[[TE-13 model]]


==Systems==
==Systems==
*[[Amelogenin]]
*[[Chymotrypsin Inhibitor 2 (CI2)]]
*[[Chymotrypsin Inhibitor 2 (CI2)]]
*[[Ubiquitin]]
*[[Ubiquitin]]
*[[Villin headpiece]]
*[[Villin headpiece]]
*[[Bovine pancreatic trypsin inhibitor (BPTI)]]


==Other==
==Other==
*[[Folding@Home]]
*[[Folding@Home]]
*[[I-TASSER]]
==General Reading==
==General Reading==
*[http://dx.doi.org/10.1126/science.181.4096.223 Christian B. Anfinsen "Principles that Govern the Folding of Protein Chains", Science '''181'''  pp. 223-230  (1973)]
*[http://dx.doi.org/10.1126/science.181.4096.223 Christian B. Anfinsen "Principles that Govern the Folding of Protein Chains", Science '''181'''  pp. 223-230  (1973)]
* Thomas E. Creighton "Proteins: Structures and Molecular Properties", W. H. Freeman, Second Edition edition (1993) ISBN 071677030X
* Thomas E. Creighton "Proteins: Structures and Molecular Properties", W. H. Freeman, Second Edition edition (1993) ISBN 071677030X
*[http://dx.doi.org/10.1140/epjd/e2006-00241-9 A.V. Yakubovich, I.A. Solov'yov, A.V. Solov'yov and W. Greiner  "Phase transition in polypeptides: a step towards the understanding of protein folding", The European Physical Journal D '''40''' pp. 363-367 (2006)]
*[http://dx.doi.org/10.1140/epjd/e2006-00241-9 A.V. Yakubovich, I.A. Solov'yov, A.V. Solov'yov and W. Greiner  "Phase transition in polypeptides: a step towards the understanding of protein folding", The European Physical Journal D '''40''' pp. 363-367 (2006)]
*[http://dx.doi.org/10.1063/1.3626859  Arieh Ben-Naim "Some aspects of the protein folding problem examined in one-dimensional systems", Journal of Chemical Physics '''135''' 085104 (2011)]
* Arieh Ben-Naim "The Protein Folding Problem and Its Solutions", World Scientific Publishing (2013) ISBN 978-981-4436-35-9
* Arieh Ben-Naim "Myths and Verities in Protein Folding Theories", World Scientific Publishing (2016) ISBN 978-981-4725-98-9
[[category: proteins]]
[[category: proteins]]

Latest revision as of 11:44, 16 September 2016

Proteins are a particular group of linear chain polymers, built up from a collection of 20 different monomers known as amino acids. Proteins, unlike many synthetic polymers, have a very specific sequence (and hence length), which results in a specific three-dimensional structure. Presently much computational effort is dedicated to the prediction of such structure from a given sequence.

Potentials and models[edit]

Systems[edit]

Other[edit]

General Reading[edit]